PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4348s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 27439.4 Da PI: 10.1467 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.5 | 2.3e-38 | 30 | 150 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s a++ Cagra.4348s0009.1.p 30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIR--------GANS 111 79*************************************************************999997772222222........2222 PP TCP 93 saakskksqksaasalnlakesrakarararertrekmr 131 ++ +s+ ++k++++ l + +r ra e t+ +++ Cagra.4348s0009.1.p 112 TSLSSSLDHKPTTTLLGSSSPFILGKRVRADEDTHHNNS 150 333333333333333333333334444444443333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-34 | 35 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSNNNNNDVG VMISSNGSAL IEQQQAPVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGAN STSLSSSLDH 120 KPTTTLLGSS SPFILGKRVR ADEDTHHNNS SNSNGSGGNN KDETFTTTPG GFWAVPARPD 180 FGQVWSFTGG VPQEMFLQQQ HHHQQPLFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS 240 LSGGSPGSGR REDDPR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4348s0009.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636329.1 | 1e-146 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-133 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | R0H8F7 | 1e-145 | R0H8F7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4348s0009.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-96 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4348s0009.1.p |