PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.4306s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 285aa MW: 30874.5 Da PI: 8.4935 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 210.2 | 5.5e-65 | 2 | 135 | 1 | 146 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR +Gn+klpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp++++e ++ s+sasp Cagra.4306s0003.1.p 2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPMDRMELMNGSTSASP 91 5899************************************************************************************** PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 +ss+q +sp++sy++sp+sssfpsp++ + +a+sl+p+l++ls+ Cagra.4306s0003.1.p 92 CSSYQ--------HSPRASYNPSPSSSSFPSPTN----PFGDANSLIPWLKNLSSN 135 *****........*******************98....56677899****999763 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.6E-60 | 3 | 132 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MTSGTRTPTW KERENNKRRE RRRRAIAAKI FAGLRIHGNF KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKGCKPMDRM ELMNGSTSAS PCSSYQHSPR ASYNPSPSSS SFPSPTNPFG 120 DANSLIPWLK NLSSNSPSKL PFFHGNSISA PVTPPLARSP TRDQVTIPDS GWLSGMQTPQ 180 SGPSSPTFSL VSRNPFFDKE AFKMGDSNSP MWTPGQSGNC SPAIPAGADQ NSDVPMSDGM 240 AAEFAFGCNA TAVIGMVKPW EGERIHGECV SDDLELTLGN SRTR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00444 | DAP | Transfer from AT4G18890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.4306s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK118850 | 0.0 | AK118850.1 Arabidopsis thaliana At4g18890 mRNA for unknown protein, complete cds, clone: RAFL21-18-A16. | |||
GenBank | AY088379 | 0.0 | AY088379.1 Arabidopsis thaliana clone 6321 mRNA, complete sequence. | |||
GenBank | BT024512 | 0.0 | BT024512.1 Arabidopsis thaliana At4g18890 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284265.1 | 0.0 | BES1/BZR1 homolog protein 3 | ||||
Swissprot | O49404 | 1e-180 | BEH3_ARATH; BES1/BZR1 homolog protein 3 | ||||
TrEMBL | R0H124 | 0.0 | R0H124_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4306s0003.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006284265.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18890.1 | 1e-161 | BES1/BZR1 homolog 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.4306s0003.1.p |