PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4268s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 637aa    MW: 71056.2 Da    PI: 9.1417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4268s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-123891248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                         ++W t+E++ll++avk++G ++W+++a ++           +++ c++++++++
  Cagra.4268s0005.1.p 38 QAWGTWEELLLACAVKRHGFRDWDSVATEVRsrsslpdVLASANKCRHKYRDLK 91
                         68************************************99**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-53298IPR009057Homeodomain-like
SuperFamilySSF466899.35E-63694IPR009057Homeodomain-like
SMARTSM007173.8E-73693IPR001005SANT/Myb domain
PfamPF002494.3E-123891IPR001005SANT/Myb domain
CDDcd001678.48E-73991No hitNo description
SMARTSM002972.0E-21284393IPR001487Bromodomain
SuperFamilySSF473702.62E-17286391IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.2E-16290408IPR001487Bromodomain
CDDcd043692.05E-15298388No hitNo description
PfamPF004394.5E-12298373IPR001487Bromodomain
PROSITE profilePS5001412.623303366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MSKEEEEAYN NNNNYISSSA RDCIEQDDDD NNNTKKIQAW GTWEELLLAC AVKRHGFRDW  60
DSVATEVRSR SSLPDVLASA NKCRHKYRDL KRRFHEQEKT DTAPAEEEET TAMAEEEKTE  120
NVGIPWLEEL RNLRVAELRR EVEQYDVSIL SLQLKVKKLE EEREEGKPDL EDERKKERSE  180
NDGSETEHRE KTVSAAEESD RENGSMNESN STATVGEDDR VGGGEPSQTR DDDSADNDNN  240
PDPVSKDTAG EDDSRGSEAS HSDELGESGT SGRKWKRKHG CSGEIRSDES KSQPLIGLLD  300
LIRSHPRGSL FERRLRSQEA KDYKSMVKQH LDIETIQRNL KQGSYDSSTL TFYKDLHLLF  360
TNAIVFFPLS SAESMAAHEL RAVVSREMRK ETRISGPRFI NREVSATNSG KADAETSDSS  420
LSRQKSSAPL VVCKKRSSVS TKASPSSSSF SQQEEMKEET LSEEKENTVT GVRSSRRASK  480
PVAATAAISN STTKGKSKNK LKHMESKSNP LNDNSSQQET GKTEKKMISS DKKKSVADFL  540
KRLKKNSPQK ESKDQNKSSG SGKKDSKAKP RELRSSRVGK KKAEVAITLV KRAPGRPQKK  600
TAEAEATATA SASGKRGRDT GSTGKDNKQP KKRIRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4268s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295614.10.0bromodomain and WD repeat-containing protein 1
TrEMBLR0FZJ30.0R0FZJ3_9BRAS; Uncharacterized protein
STRINGCagra.4268s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein