PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4247s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 321aa MW: 33904.1 Da PI: 6.097

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4247s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.1	4.1e-27	1	102	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........................ 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Cagra.4247s0002.1.p 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpskslplygalglthhhhqhqhqh 90 9*****************************************999999988888888888855555666666776666655444344444 PP TCP 89 ...........k 89 + Cagra.4247s0002.1.p 91 qydeqggggafA 102 444444544441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.287	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-28	1	146	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS TLSVSLRSSG 60 STLSAPPSKS LPLYGALGLT HHHHQHQHQH QYDEQGGGGA FATAPLLGFH HHLQQQQAPV 120 ETIPDGESFS RKRYRSVDLS KENDDQKQNE SKSLKESDPA AAPMWAVAPT SRASGGNTFW 180 MLPVPTTAGN QMESSSNNNN ITAGHRAPMW PFVNSAGAGG GGGGGGATHF MAGTGFSFPM 240 DQYRGSPLQL GSFVAQPQPT QNLGLSMPDS NLGMLAALNA AYSRGGNGNA NAEQAVEHQE 300 KPQQSEHDED SREDNSNSSE *

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4247s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302348.1	0.0	transcription factor TCP8
Swissprot	Q9C518	1e-175	TCP8_ARATH; Transcription factor TCP8
TrEMBL	R0GHN8	0.0	R0GHN8_9BRAS; Uncharacterized protein
STRING	Cagra.4247s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-147	TCP family protein

Link Out ? help Back to Top
Phytozome	Cagra.4247s0002.1.p

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]