PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4191s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 219aa MW: 23987 Da PI: 9.316 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.8 | 3.5e-35 | 46 | 103 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ Cagra.4191s0001.1.p 46 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 103 799*****************************99********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-16 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.0E-29 | 47 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-31 | 48 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.717 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.61E-6 | 174 | 216 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 179 | 218 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLEVRAMDHM TPKSPEPESE TPIRIQPAKP ISFSNGFIKR HHHNVTVTYK ECLKNHAAAI 60 GGHALDGCGE FMPSPSSTPS DPTSLKCAAC GCHRNFHRRD PDDSSAALPP SSLPLSSTTT 120 AAIEYQPHHR HHPLPPPLPR SPNSSSPPPI SSSYMLLALS DLNFSAAAAA AGRHNNNIST 180 TPGSRKRFRT KFSSSQKEKM HEFADKIGWK IQKRDEDNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4191s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117188 | 1e-131 | AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15. | |||
GenBank | AP002049 | 1e-131 | AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13. | |||
GenBank | AY093171 | 1e-131 | AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | AY128820 | 1e-131 | AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-131 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291497.1 | 1e-104 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LHF0 | 2e-90 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | R0HGU0 | 1e-103 | R0HGU0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4191s0001.1.p | 1e-160 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-53 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4191s0001.1.p |
Publications ? help Back to Top | |||
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