PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4190s0017.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 339aa    MW: 38198.3 Da    PI: 9.4272
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4190s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3253106255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Cagra.4190s0017.1.p  53 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 106
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2949107IPR009057Homeodomain-like
PROSITE profilePS5129412.75949109IPR017930Myb domain
SuperFamilySSF466891.97E-1451107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2253108IPR006447Myb domain, plants
PfamPF002491.2E-954105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MITTMEGGGK IDREEEEEED EGEGHESKAS SNSTVEESDK KTKVRPYVRS KVPRLRWTPD  60
LHLRFVRAVE RLGGQERATP KLVRQMMNIK GLSIAHVKSH LQMYRSKKID DHGQAISDHK  120
HLFETSTDRN IYKLSQLPMF RGYNHNNDSP FRYGSKFSNA SLWSSSSHET NRSLIDQIRP  180
GLIRSSSVSN NIRGSEYWTN NRSFQNIYSS SVTSHSPKLR HDHQERTNSA SIQGHSRTFQ  240
NGVEENTNMH GYCNKTTGKR NASTSTDLDL DLSLKLRQPE KTVSEETESA ATTTDQTLSL  300
SLCSGSSALK KSRLIKTDEE DRTVKIGGHQ ASTLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1554108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1554108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1554108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1554108357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4190s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176890.0AK117689.1 Arabidopsis thaliana At2g38300 mRNA for unknown protein, complete cds, clone: RAFL17-35-G17.
GenBankBT0049730.0BT004973.1 Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294540.10.0probable transcription factor KAN4
TrEMBLR0HTS20.0R0HTS2_9BRAS; Uncharacterized protein
STRINGCagra.4190s0017.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-167G2-like family protein