PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4170s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 667aa    MW: 71880.1 Da    PI: 4.9808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4170s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.2e-1102806662374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++++e+A+a+++g++e a+++La +s++ + ++++ ++l+ +++ AL++r+++     +++lp s+++e   +e+l +++l++e+sP++
  Cagra.4170s0002.1.p 280 RQTVMEIATAIAEGKTEIASEILASVSQTPNLRRNSEEKLVDFMVTALRHRINN----PAESLP-SPATELYGKEHLLSTQLLYELSPCF 364
                          6889**************************************************....333343.344445699**************** PP

                 GRAS  92 kfshltaNqaIleavege..erv...HiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesg......skeeleetger 164
                          k+++++aN aIl+a+ ++    v   H+iDfdi++G+Q++ Ll+aL++R++g      +p ++iT+v +++ g       +e+l+++g+ 
  Cagra.4170s0002.1.p 365 KLGFMAANLAILDAAGNNdeG-VinlHVIDFDIGEGGQYVHLLHALSTRRNGnsqntkTPVVKITAVTNNSDGfvvgdgGEERLKAVGDL 453
                          ***************999642.2355*********************999555566669**********88889****99********** PP

                 GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                          L+++ ++lg++++fnv+++ rl dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl
  Cagra.4170s0002.1.p 454 LSQLGDRLGISVSFNVVASLRLGDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLNPRVVTIVEQEMNSNTAPFL 543
                          ****************8888********************************************************************** PP

                 GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           r++e++ +y al++s+e+++p+ + +r kvE+  +gr+ivn+vaceg +r+er+e ++kWr+r+++aGF+ ++ sek+a+++k+ l++ 
  Cagra.4170s0002.1.p 544 GRVSESCACYGALLESVESTVPSSNTDRGKVEEG-IGRKIVNAVACEGMDRIERCEVFGKWRMRMSMAGFELMASSEKIAESMKSRLSNN 632
                          **********************************.****************************************************998 PP

                 GRAS 345 k.sd...gyrveeesgslvlgWkdrpLvsvSaWr 374
                          + ++   g++v+e++g +++gW++r+L ++SaWr
  Cagra.4170s0002.1.p 633 NgKRvhsGFTVKEDNGGVCFGWMGRTLAVASAWR 666
                          75433338*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.77253642IPR005202Transcription factor GRAS
PfamPF035142.5E-107280666IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSSGFPGGGG GGGPEFFNGG GGRSVIPGGP GTVINVGNNN NIQPTYRNQV PGMFLDQIGN  60
RVAAGHGFAG KRTLADFQAA QQHQQQQYQQ QQQQQPFYNQ AALNAFLLRS VKPRNYQNHL  120
QSPSPVIDLT SLNDISFSQR YGLPVLRSQT TTQQSDLGLF GGIRMGYGSG DNTNNNLTLT  180
GVPCIEPVQQ NRVHESENML NSLRELEKQL LDDDDDESDA QGGGDDDVSV ITNSNSDWIQ  240
NLVTPDPNPN PNPVMTSSPS SSSSSSSPST ASTTTSVCSR QTVMEIATAI AEGKTEIASE  300
ILASVSQTPN LRRNSEEKLV DFMVTALRHR INNPAESLPS PATELYGKEH LLSTQLLYEL  360
SPCFKLGFMA ANLAILDAAG NNDEGVINLH VIDFDIGEGG QYVHLLHALS TRRNGNSQNT  420
KTPVVKITAV TNNSDGFVVG DGGEERLKAV GDLLSQLGDR LGISVSFNVV ASLRLGDLSR  480
ESLGCDPDEP LAVNLAFKLY RVPDESVCTE NPRDELLRRV KGLNPRVVTI VEQEMNSNTA  540
PFLGRVSESC ACYGALLESV ESTVPSSNTD RGKVEEGIGR KIVNAVACEG MDRIERCEVF  600
GKWRMRMSMA GFELMASSEK IAESMKSRLS NNNGKRVHSG FTVKEDNGGV CFGWMGRTLA  660
VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3325266665473Protein SHORT-ROOT
5b3h_B8e-3425266611419Protein SHORT-ROOT
5b3h_E8e-3425266611419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4170s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280138.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGCagra.4170s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8