PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4153s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28805.2 Da PI: 5.098 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++lv ++ ++G g+W+ +++ g++R++k+c++rw+++l Cagra.4153s0008.1.p 14 RGEWTEEEDQKLVAYIDEYGVGDWRFLPERAGLRRCGKSCRLRWLNFL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E++ +++++ lG++ W++Ia+ m+ +R+++++k++w++ Cagra.4153s0008.1.p 67 KGKFTPQEEQTILNLHSVLGNR-WAAIAQQMP-NRSDNDIKNHWNSC 111 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.083 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.017 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-9 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRATWFEAD GTKRGEWTEE EDQKLVAYID EYGVGDWRFL PERAGLRRCG KSCRLRWLNF 60 LRPGINKGKF TPQEEQTILN LHSVLGNRWA AIAQQMPNRS DNDIKNHWNS CLKKRLERNG 120 INPVTHQPFV SNLVVKTSLF NTECSSSSSA TASPSFSSGS ACLLNKIATG ISSRQHCVDM 180 MKNILSGPRT TSIHCHEEEE DEGEELNKDD HEKILASGYQ EEDFLMWDEE ELRRFMEEIG 240 VMEFGTTSYD CN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4153s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303290.1 | 1e-168 | transcription factor MYB34 | ||||
TrEMBL | R0IH74 | 1e-166 | R0IH74_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4153s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 2e-90 | myb domain protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4153s0008.1.p |