PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4137s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 126aa MW: 15271.9 Da PI: 10.0993 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 66.4 | 5e-21 | 15 | 66 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr++Wt + H Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ + Cagra.4137s0010.1.p 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQVF 66 8*************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 11 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-14 | 15 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-19 | 15 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-6 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK 60 SHLQVFIIHT HIIYMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF 120 LDILN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4137s0010.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635980.1 | 5e-71 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0HDE7 | 1e-71 | R0HDE7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4137s0010.1.p | 1e-87 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 8e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4137s0010.1.p |