PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4044s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 328aa MW: 38026.4 Da PI: 5.6284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.6 | 1.8e-14 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +en+ r ++ +Rr+ +lKK +EL +LCd+++++iifs++ Cagra.4044s0006.1.p 11 VENDKARAKSLKQRREALLKKVKELTILCDIQACLIIFSPN 51 69999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.741 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.27E-24 | 3 | 85 | No hit | No description |
PRINTS | PR00404 | 4.9E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-12 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MPRKNVKLAW VENDKARAKS LKQRREALLK KVKELTILCD IQACLIIFSP NEVGPVVWPS 60 VEKARGLLDD FFALPELAQK NKETSIESFL KEKTKTVHKK LMESDKKNKE YVIDELMMHL 120 QNGRAISDLN LSEIYALLSF SKEKIIHFRN ELGFMQFSPL RDPPMLPFEV QVEQLMIPTN 180 HDVVATTRET KNHYLIDQWF LDPKPLEPLG YQRSYCPYKG SSSNGNPNLE MELFCPEVMS 240 FLGLGESTAQ PLQHHNMNDN PIMAMNQREQ YSFDFMSHEM EIQEEVNNNT TTTNDDVRNE 300 TTARDDHANM AMFDINRDWL NLNNNHF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4044s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451565.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL92 | ||||
Refseq | XP_010513278.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL36 | ||||
TrEMBL | R0HWZ5 | 0.0 | R0HWZ5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4044s0006.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-101 | AGAMOUS-like 48 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4044s0006.1.p |