PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4031s0031.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 402aa MW: 44733 Da PI: 6.0137 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.3e-32 | 198 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ Cagra.4031s0031.3.p 198 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 252 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.579 | 195 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.76E-17 | 196 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 197 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-23 | 198 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-10 | 200 | 251 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-21 | 286 | 333 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MNNNPVPCQA FPLVSGGSSS GGNLFSSSPG FCNGVYVSSS SQARPPVSTV PRGSTSVSQS 60 SVEGQRQECS IDTQSLQVIN QPQQQKNMTW SSDQLQGFFD FPVPDPQAES SRTMVSSKEV 120 HSKNEWPDWA DQLMSDDVLI PNWSELLGDP NVLNLDSKIT TPSPDIARRE IVFNDQRHVD 180 PSVDLDAKNS PASSMISKQR MRWTPELHEA FVEAINQLGG SERATPKAVL KLINSPGLTI 240 YHVKSHLQKY RTARYKPDLS ENKEEPPVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK 300 QLHEQLEIQR SLQLQIEEQG RYLQMMIEKQ QKMQEDKKES SFSSSMPEAN PSAPSQNLSQ 360 VFLPKATNSD PSITQKLQSG FNTMGQSESA SGSNRKRVRE D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-29 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4031s0031.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118630 | 0.0 | AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11. | |||
GenBank | BT005352 | 0.0 | BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297831.1 | 0.0 | myb family transcription factor PHL13 isoform X2 | ||||
Refseq | XP_023642523.1 | 0.0 | myb family transcription factor PHL13 isoform X1 | ||||
Refseq | XP_023642524.1 | 0.0 | myb family transcription factor PHL13 isoform X2 | ||||
Refseq | XP_023642525.1 | 0.0 | myb family transcription factor PHL13 isoform X2 | ||||
Refseq | XP_023642526.1 | 0.0 | myb family transcription factor PHL13 isoform X2 | ||||
Swissprot | F4J3P7 | 0.0 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | R0HLZ5 | 0.0 | R0HLZ5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4031s0031.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4031s0031.3.p |
Publications ? help Back to Top | |||
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