PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4031s0031.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 442aa    MW: 49206.9 Da    PI: 5.6968
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4031s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.31.5e-32238292155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  Cagra.4031s0031.1.p 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 292
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.579235295IPR017930Myb domain
SuperFamilySSF466894.3E-17236292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29237294IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-23238292IPR006447Myb domain, plants
PfamPF002493.5E-10240291IPR001005SANT/Myb domain
PfamPF143791.2E-21326373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MTLASDFGFP TAMSSSYTTL EERYHHNVPN ISWVSSGQEL MNNNPVPCQA FPLVSGGSSS  60
GGNLFSSSPG FCNGVYVSSS SQARPPVSTV PRGSTSVSQS SVEGQRQECS IDTQSLQVIN  120
QPQQQKNMTW SSDQLQGFFD FPVPDPQAES SRTMVSSKEV HSKNEWPDWA DQLMSDDVLI  180
PNWSELLGDP NVLNLDSKIT TPSPDIARRE IVFNDQRHVD PSVDLDAKNS PASSMISKQR  240
MRWTPELHEA FVEAINQLGG SERATPKAVL KLINSPGLTI YHVKSHLQKY RTARYKPDLS  300
ENKEEPPVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK QLHEQLEIQR SLQLQIEEQG  360
RYLQMMIEKQ QKMQEDKKES SFSSSMPEAN PSAPSQNLSQ VFLPKATNSD PSITQKLQSG  420
FNTMGQSESA SGSNRKRVRE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4031s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186300.0AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642523.10.0myb family transcription factor PHL13 isoform X1
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLR0HLZ50.0R0HLZ5_9BRAS; Uncharacterized protein
STRINGCagra.4031s0031.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]