PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4006s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 385aa    MW: 40458.9 Da    PI: 9.3633
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4006s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.8e-3961166489
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg 88 
                           k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +s  +
  Cagra.4006s0026.1.p  61 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfsQS--S 148
                          5899**********************************************************9999988752222222222222111..1 PP

                  TCP  89 .................k 89 
                                           +
  Cagra.4006s0026.1.p 149 ksassplsfhstgmslyE 166
                          112333333333333320 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3665180IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03165119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MELRTNQNSA AESTLQLNSG EKPSPGSIPF VGAMSTTTSS STSNSTSTSS GTALAVVKSA  60
VKKPSKDRHT KVDGRGRRIR MPAMCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAST  120
GTGTIPANFS TLNASLRGGG STLFSQSSKS ASSPLSFHST GMSLYEDSNG TNGSSVDPSR  180
KLLNSAAAAA AQQNAAAVFG FHHQMYPPIM STERAPTNLV KPPYREDYFK EPSSGAEPSG  240
SSQKQGQFQD QELGPGRATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQPA  300
HQMWAFNPGN YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAATMRGSR GDGLAMTLDQ  360
HQHQHQHQEP NQTQTSENGG DDKK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4006s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0692730.0AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence.
GenBankAY0807760.0AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankAY1504880.0AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301977.10.0transcription factor TCP22
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGCagra.4006s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-175TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]