PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4003s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 304aa MW: 34129.4 Da PI: 8.3765 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.6 | 1.2e-37 | 49 | 109 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt GG++r vPvG+grrk+k+++ Cagra.4003s0032.1.p 49 PTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPVGAGRRKSKTTN 109 67899****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-36 | 35 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 51 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.258 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MLESKDPAIK LFGMKIPFPT VLDVTDEDEK NQNETLTDQS EKDKTLKKPT KILPCPRCNS 60 METKFCYYNN YNVNQPRHFC KACQRYWTSG GTMRSVPVGA GRRKSKTTNN STSSSPHYHH 120 VTISETNGPV LSFSLGDDQK VSNHMFGNPK PAVSRIENIN DDCSNNTTSN GLDCFPGVSW 180 PYAWNPGYYP VYPYWNVPML SSPVNNSSPN STLGKHLRDE EETMKQQKNR SVLVPKTLRI 240 DDPNEAAKSS IWTTLGIKND VLFKGFDSKK EAKVMNKEET ETSLVLCANP AALSRSVNFH 300 EQM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4003s0032.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269|PubMed:16002617}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280864.1 | 0.0 | cyclic dof factor 1 | ||||
Swissprot | Q8W1E3 | 1e-175 | CDF1_ARATH; Cyclic dof factor 1 | ||||
TrEMBL | R0EX08 | 0.0 | R0EX08_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4003s0032.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13979 | 16 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 1e-173 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4003s0032.1.p |
Publications ? help Back to Top | |||
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