PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4003s0023.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 165aa    MW: 19264 Da    PI: 8.5956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4003s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141565148
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lvd  +  G +   +W+ +++  g++R++k+c++rw +yl
  Cagra.4003s0023.1.p 15 KGPWTAEEDGKLVDFLRTRGDRggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
                         79***********************************************97 PP
2Myb_DNA-binding56.28.1e-1871115147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T+eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++
  Cagra.4003s0023.1.p  71 RGLFTEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 115
                          788*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18668IPR009057Homeodomain-like
PROSITE profilePS5129412.8861065IPR017930Myb domain
SuperFamilySSF466899.9E-2512112IPR009057Homeodomain-like
SMARTSM007174.2E-71467IPR001005SANT/Myb domain
PfamPF002491.6E-121565IPR001005SANT/Myb domain
CDDcd001674.22E-51765No hitNo description
PROSITE profilePS5129426.18666120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2669121IPR009057Homeodomain-like
SMARTSM007179.8E-1770118IPR001005SANT/Myb domain
PfamPF002495.0E-1671115IPR001005SANT/Myb domain
CDDcd001678.45E-1274116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGGRKPCCDE VGLRKGPWTA EEDGKLVDFL RTRGDRGGWC WRDVPKLAGL RRCGKSCRLR  60
WTNYLRPDLK RGLFTEEEIQ LVIDLHARLG NRWSKIAVEL PGRTDNDIKN YWNTHIKRKL  120
IRMGIDPNTH RRFEFNQQKV NEEEKVLLYG DLGYEDLELG CFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281312025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4003s0023.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990261e-132AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAK1756871e-132AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14.
GenBankAY5196441e-132AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ4471051e-132DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ6533901e-132DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282174.11e-104transcription factor MYB20
SwissprotQ50EX61e-66ODO1_PETHY; Protein ODORANT1
TrEMBLR0F0I21e-103R0F0I2_9BRAS; Uncharacterized protein
STRINGCagra.4003s0023.1.p1e-116(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.12e-95myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]