PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4003s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 518aa MW: 55621.6 Da PI: 5.5982 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.5 | 3.9e-20 | 106 | 156 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l+W LH++F+eave L G+ kA Pk+i ++m v+gL+++++ SHLQkYR Cagra.4003s0001.1.p 106 LKWKDGLHSKFLEAVEFL-GERKALPKAIQRFMRVDGLSRKQISSHLQKYRR 156 79****************.9*******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 3.4E-19 | 106 | 156 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 106 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-12 | 106 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
YIGETNSADD GSNQDVMVTS SNNTTYDDSN QDVMVTSSNN TDDDDSNQDV TVTSANNTAD 60 AGSNEDVTVT SSNNTADDGS NQDETVTSTN NAAGGSPAGP RRPVMLKWKD GLHSKFLEAV 120 EFLGERKALP KAIQRFMRVD GLSRKQISSH LQKYRRQMRK LKKKAAKAEL AKENRNDISA 180 SSTSCDPLDS YKTKQLNMEN LFKSQVGYGQ SSILLYKNTS NSYMLHGRPV YDLSLTRSNL 240 LPMGGSCGFS TGLLPLNQEG RSVLATPQDL SRVVELGKYG TPNGSLGMYS NQGTGHMQSN 300 YSGIFVDAHG NLFGHGGAGR VGGNNAYGSF GESFSAINLN FNNNNISNHG ASPSINPSTF 360 ASSLANDGQT ESYLLAQMYG RVPRSSNFGT SQASQVPLFG QYGTTNDVYD VARINANGYG 420 DLTGLGGGRF YGGNVNDFLG ENVGTMNMNF SNTNMTSHGS SSSSLSSPFS PLSFNMGPVQ 480 RNYNAQPDGL IPTLESLSVC NDHHDNGNQV YSQFDQNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4003s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R0F0J2 | 0.0 | R0F0J2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.4003s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17441 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62110.1 | 9e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4003s0001.1.p |