PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3957s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 401aa    MW: 45325 Da    PI: 7.9923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3957s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32226279255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cagra.3957s0006.1.p 226 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 279
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15223279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28224279IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23226279IPR006447Myb domain, plants
PfamPF002492.7E-7227278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
SSKPTNHPFQ DLSLSNNSHH HQQQQNHHHH HQPHLLPNCN GSNILTSFQF PTQQHQQQQQ  120
HLQGFLAHDL NTHLRPIRGI PLYHNPPPPQ HQHHRPPPPC FPFDPSSLIP SSSPSLTGNN  180
NSFNTSNVSN SGLITNPNYH NHHHHQTLNR ARFMPRFPAK RSMRAPRMRW TTTLHARFVH  240
AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKAAASS GQSDVYENGS  300
SGDNNSDDWM FDMNRKSRDS EEMTNPTEKS NGLWTNSSGE ARLHGKLIDN VAEIMLPSEK  360
EIDGKCSSYE RISSEEMSSS SISGTSPFKP NLEFTLGRSH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16227281357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16227281357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16227281357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16227281357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16227281458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3957s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307698.10.0probable transcription factor KAN2
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLR0GXP90.0R0GXP9_9BRAS; Uncharacterized protein
STRINGCagra.3957s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.10.0G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]