PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3839s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 317aa    MW: 35128.3 Da    PI: 8.2162
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3839s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28139199259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD y+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++e+tY+g+H+++
  Cagra.3839s0004.1.p 139 DDLYSWRKYGQKDILGAKYPRSYYRCTFRntqHCWATKQVQRSDGDPTIFEVTYRGTHTCS 199
                          8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.356133196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-27135200IPR003657WRKY domain
SuperFamilySSF1182906.54E-25137200IPR003657WRKY domain
SMARTSM007741.5E-38138200IPR003657WRKY domain
PfamPF031062.9E-25139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAMMSWEQRG LLNELIHGLK AAKQLQASPS PSPSPSSSSC LTREMKDTLL HQVVSSYENA  60
IMMLNGSHNP TTERATYPVA NSGKVPESPV SITGSPKSED FLDVGSKDYT LSSKKRKMLP  120
KWTAQVRISP ERGLEGPHDD LYSWRKYGQK DILGAKYPRS YYRCTFRNTQ HCWATKQVQR  180
SDGDPTIFEV TYRGTHTCSQ QGNTKRETKP NNPIIKTVNY QTTLLDSLRT NLTVRTNGLE  240
GEAFSFPVTP PPFYSFDSIH GGGTFRHVGN SCPSDFTGLI STNTSTGSSP IFDVDFHFDP  300
TAEIDAGFPT FLHDSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-181401961874Disease resistance protein RRS1
5w3x_D4e-181401961874Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3839s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423961e-125AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336861e-125AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011071e-125BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288221.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y81e-157WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW300.0R0GW30_9BRAS; Uncharacterized protein
STRINGCagra.3839s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-159WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]