PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0041.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 401aa    MW: 46024.6 Da    PI: 8.4696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1921961090
                         HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                          ++++ l++p  f++eh  gk+ee+k+ +l++ +s r+Wevk+  ++++    lt+GW++Fvka++L+ gD++vFk++g++ f
  Cagra.3807s0041.1.p 21 GFETH-LTIPVVFFSEHiVGKHEEEKKARLRSdSSERTWEVKM--DGRR----LTQGWNDFVKAHDLRIGDVIVFKHEGDMVF 96
                         56666.9***********667778899***996777*******..9998....***********************9998877 PP
2B367.22.3e-211742601198
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l  + + lpkk a+   ++k ++ +++l +e+g+sW+++l++r + g+y++++GW +F+++n+ kegD+++F l+g+ e ++++ ++ 
  Cagra.3807s0041.1.p 174 LIFDTINLPKKAASFVALNKGCH-KIILVNEEGKSWTLNLRFRESEGSYYMRGGWTRFCSENRQKEGDMITFNLVGDGESTPLLCICP 260
                          4446789******9999999886.*****************************************************88889999996 PP
3B3413.5e-13294392199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT.--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkang.LkegDfvvFkldg 86 
                          f+++ +++++ k++ ++lp +f++ +g+ ++++ +++led++g +   kl     + ++    l+kGWk F++ n+ Lk+g+ +++kl +
  Cagra.3807s0041.1.p 294 FVTISLTAYNIKNSKITLPVEFTRVNGI-TNKHEKIILEDKHGVKRLTKLVRdgpDHRK--RGLGKGWKLFCSVNDvLKVGEPFTLKLLW 380
                          7788899****************88865.56888****************775443333..56************9456*********** PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           +++++++k+++k
  Cagra.3807s0041.1.p 381 -ENGTPLLKFCSK 392
                          .8999*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-218111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-238106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.91511104IPR003340B3 DNA binding domain
CDDcd100171.34E-1512101No hitNo description
SMARTSM010192.9E-2314104IPR003340B3 DNA binding domain
PfamPF023621.0E-132496IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-18163251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.184164262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-19164259IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-19164260No hitNo description
SMARTSM010192.9E-22165262IPR003340B3 DNA binding domain
PfamPF023621.6E-19170260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-13288392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-13291395IPR015300DNA-binding pseudobarrel domain
CDDcd100178.02E-12293391No hitNo description
SMARTSM010194.2E-18294393IPR003340B3 DNA binding domain
PfamPF023621.6E-12294392IPR003340B3 DNA binding domain
PROSITE profilePS508638.05294393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVNSPLQSPK NPHFFQPLLP GFETHLTIPV VFFSEHIVGK HEEEKKARLR SDSSERTWEV  60
KMDGRRLTQG WNDFVKAHDL RIGDVIVFKH EGDMVFSVTP FGPSCCEIQY PQSHIKKEHY  120
NDDDDDDDDD KDDMENQHTT REGLRKRNLK PKTEPESFVS YDYSFVANVT ASNLIFDTIN  180
LPKKAASFVA LNKGCHKIIL VNEEGKSWTL NLRFRESEGS YYMRGGWTRF CSENRQKEGD  240
MITFNLVGDG ESTPLLCICP EEVCSELMSK AKEKKKLVKR RRWEVSPSPG RNSFVTISLT  300
AYNIKNSKIT LPVEFTRVNG ITNKHEKIIL EDKHGVKRLT KLVRDGPDHR KRGLGKGWKL  360
FCSVNDVLKV GEPFTLKLLW ENGTPLLKFC SKVKEEPIYV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283864.10.0B3 domain-containing protein REM7
TrEMBLR0F4T20.0R0F4T2_9BRAS; Uncharacterized protein
STRINGCagra.3807s0041.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-88B3 family protein