PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0037.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 488aa    MW: 54743.2 Da    PI: 7.6244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-2022961193
                         HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         +ks  l +p kf++eh +g k+e+kt++l++  s r+Wevk+  ++++    lt+GW eFv+a++L+ gDfvvF+++g++ f  +
  Cagra.3807s0037.1.p 22 FKS-YLKIPVKFFSEHiEG-KHEGKTVKLRSdASERTWEVKM--DGNR----LTQGWTEFVEAHDLRIGDFVVFRHEGDMLF--H 96
                         444.599*********644.56789*****97889*******..9999....***********************9887766..4 PP
2B369.64e-22152244297
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f++++p ++ +s++++lp +fa+++g +k    +++l++e+g+sWe k+  +k  g++++ +GWk+ +++n+Lk+gD+++Fkl + + ++
  Cagra.3807s0037.1.p 152 FSKTVPRSSISSDMVTLPIDFARRNGFDKGM-HEIVLMNEQGKSWESKV-KSKIAGQVFIHGGWKGLCRENKLKVGDSCTFKLLQ-NAER 238
                          5678899******************888766.59***************.47777889************************998.5666 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          +v++++
  Cagra.3807s0037.1.p 239 PVFQLC 244
                          898887 PP
3B338.22.6e-12274364799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++++lk g  +l+  f+++++++k e  +++l d++  +W +kl++++++  ++ + + Wk+F++an++++g +++++l++  ++++++k
  Cagra.3807s0037.1.p 274 TANSLKIGKQRLSLYFTSANMLNKLE--KIILVDKDKVEWLMKLKVDRSGAVFICGgNDWKGFCSANEVCAGKSLTLELIR-GSGSPLLK 360
                          45566667778888999999999655..8***************888887665544367********************98.78889*** PP

                          EE-S CS
                   B3  96 vfrk 99 
                          +++k
  Cagra.3807s0037.1.p 361 FCSK 364
                          9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-255105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-229110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.63411103IPR003340B3 DNA binding domain
CDDcd100173.33E-181297No hitNo description
SMARTSM010191.1E-2414103IPR003340B3 DNA binding domain
PfamPF023621.4E-142394IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-21145244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-21145244IPR015300DNA-binding pseudobarrel domain
CDDcd100179.62E-20151244No hitNo description
PROSITE profilePS5086314.001151247IPR003340B3 DNA binding domain
SMARTSM010196.8E-28152247IPR003340B3 DNA binding domain
PfamPF023623.1E-21152244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-11265364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617268365IPR003340B3 DNA binding domain
SMARTSM010192.5E-19268365IPR003340B3 DNA binding domain
CDDcd100171.00E-9268363No hitNo description
SuperFamilySSF1019363.14E-11269365IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-10270364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MANASPSSPT NHHFFQPLLN EFKSYLKIPV KFFSEHIEGK HEGKTVKLRS DASERTWEVK  60
MDGNRLTQGW TEFVEAHDLR IGDFVVFRHE GDMLFHVIAL GSSCCEIQYS QSSSHEEGEE  120
SDDIEKTARP EKEVEENVRK ESDHSSSDLD CFSKTVPRSS ISSDMVTLPI DFARRNGFDK  180
GMHEIVLMNE QGKSWESKVK SKIAGQVFIH GGWKGLCREN KLKVGDSCTF KLLQNAERPV  240
FQLCGCTEVK RKKKVRFAED DQTGENRFVE LTPTANSLKI GKQRLSLYFT SANMLNKLEK  300
IILVDKDKVE WLMKLKVDRS GAVFICGGND WKGFCSANEV CAGKSLTLEL IRGSGSPLLK  360
FCSKKDQPPN EAEDGIRKKA RVQQNGSLET CKRGPSRASK MGPELEIRDK TTEKGEPSRA  420
SSGNQGNLQQ KQPCSVIDQV AKVKESVVDT LTSIRCFLAE LEPMEQKLED SLQDINKLGM  480
ISNLISY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283645.20.0B3 domain-containing protein REM8 isoform X1
SwissprotQ8H2D10.0REM8_ARATH; B3 domain-containing protein REM8
TrEMBLR0GZI50.0R0GZI5_9BRAS; Uncharacterized protein
STRINGCagra.3807s0037.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]