PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3790s0010.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 840aa MW: 93381.9 Da PI: 6.4204

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3790s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.6e-29	552	602	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Cagra.3790s0010.1.p 552 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 602 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	537	622	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-26	554	602	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-20	731	821	No hit	No description
SMART	SM00666	4.9E-22	739	821	IPR000270	PB1 domain
PROSITE profile	PS51745	19.58	739	821	IPR000270	PB1 domain
Pfam	PF00564	2.1E-18	740	820	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.1E-26	740	821	No hit	No description
CDD	cd06407	9.88E-33	740	820	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG GDLDGAPTRF 60 TDYSLLLASS ESETKTNETT NQVPSPLWGI TPLENPDTYC AIKAKMTQAL RYFKESTGQQ 120 HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN SNGLNQYRMV SLTYMFSLDG ERDGDLGLPG 180 RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPSRQLCV GVVELIMTSP 240 KINYAPEVEK VCKALEAVNL KTSEILNHET TQICNEGRQN ALAEILEILT VVCETYKLPL 300 AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC MGKVCMSTSD LAVYVVDAHV WGFRDACAEH 360 HLQKGQGVAG RAFLSGNLCF CRDVTGFCKT DYPLVHYARM FKLTSCFAVC LKSTYTGDDE 420 YVLEFFLPPA ITDKSEQDCL LGSLFQTMKQ HYSSLKVVSE TELCENEISL EVVEASEDGM 480 VYSKLEPIRI HHQAPISKDY LELNAPKQKL SLNSDVVKNN EVADGFERFQ TLEPLPEAKT 540 VKKSERKRGK TEKTISIEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN 600 KVNRSLTRLK HVIDSVQGAD GSLNLTSLSP RPWSRQISPI ENQPAKNFPP ACTSPPSYLQ 660 DVKIENRDAE DSAGSSTSRA SCKVGPISET RFRLPTHNQE TPRQTALDDS DSSSKNIANF 720 WTHLSCQDTA SPTTLHNKLV SIKATYREDI IRFKISAESV SIMELKQQVA KRLKLEMAAF 780 ELKYLDDDSE WVSVSCDADL SECLETSAAK ANTLRLSVHD VTLNFGSSCE SSEENMMCL*

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG GDLDGAPTRF  60
TDYSLLLASS ESETKTNETT NQVPSPLWGI TPLENPDTYC AIKAKMTQAL RYFKESTGQQ  120
HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN SNGLNQYRMV SLTYMFSLDG ERDGDLGLPG  180
RVFRKKLPEW TPNVQYYSSK EFSRLGHALH YNVQGTLALP VFEPSRQLCV GVVELIMTSP  240
KINYAPEVEK VCKALEAVNL KTSEILNHET TQICNEGRQN ALAEILEILT VVCETYKLPL  300
AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC MGKVCMSTSD LAVYVVDAHV WGFRDACAEH  360
HLQKGQGVAG RAFLSGNLCF CRDVTGFCKT DYPLVHYARM FKLTSCFAVC LKSTYTGDDE  420
YVLEFFLPPA ITDKSEQDCL LGSLFQTMKQ HYSSLKVVSE TELCENEISL EVVEASEDGM  480
VYSKLEPIRI HHQAPISKDY LELNAPKQKL SLNSDVVKNN EVADGFERFQ TLEPLPEAKT  540
VKKSERKRGK TEKTISIEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN  600
KVNRSLTRLK HVIDSVQGAD GSLNLTSLSP RPWSRQISPI ENQPAKNFPP ACTSPPSYLQ  660
DVKIENRDAE DSAGSSTSRA SCKVGPISET RFRLPTHNQE TPRQTALDDS DSSSKNIANF  720
WTHLSCQDTA SPTTLHNKLV SIKATYREDI IRFKISAESV SIMELKQQVA KRLKLEMAAF  780
ELKYLDDDSE WVSVSCDADL SECLETSAAK ANTLRLSVHD VTLNFGSSCE SSEENMMCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3790s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300704.2	0.0	protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	R0GCV5	0.0	R0GCV5_9BRAS; Uncharacterized protein
STRING	Cagra.3790s0010.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.3790s0010.1.p

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]