PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3756s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 21932.2 Da PI: 7.4682 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 84.5 | 2.6e-26 | 12 | 111 | 6 | 89 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasn 84 +r+ T+ R RR+Rl+++caa++F+L++eLGf++d+ t+ WLl++a+pai ++tg + + ++s +s ++ Cagra.3756s0013.1.p 12 RRTRMTPTSSKDRHRRIRLPVTCAAQVFQLTKELGFKTDGATVGWLLRNAEPAILAATGHgldatskdtpsD------F-NHSYMNSYNF 94 566667799999************************************************665443222220......2.2222222222 PP TCP 85 sssg............k 89 ++++ Cagra.3756s0013.1.p 95 HGNHifynspidnsvhY 111 22223344444333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.402 | 9 | 68 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.1E-22 | 19 | 95 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDMRNNKNNT ERRTRMTPTS SKDRHRRIRL PVTCAAQVFQ LTKELGFKTD GATVGWLLRN 60 AEPAILAATG HGLDATSKDT PSDFNHSYMN SYNFHGNHIF YNSPIDNSVH YADTSGLASH 120 PRENITGHHG TVFPGSSTSF PDLMVNHYRP GHGMLRHSVP RPQPQQQPQQ QPLSDDFDEV 180 ETVMAEQGYY QPRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3756s0013.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291936.2 | 1e-119 | transcription factor TCP15 | ||||
Swissprot | Q9M1U4 | 5e-24 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | R0H6B8 | 1e-107 | R0H6B8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3756s0013.1.p | 1e-145 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16163 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 4e-24 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3756s0013.1.p |
Publications ? help Back to Top | |||
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