PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3631s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 456aa MW: 49107.8 Da PI: 10.3426 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.4 | 1.1e-14 | 87 | 174 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++ +qCk++++ ++k+yk++k + + + +s++++fd+l+ Cagra.3631s0005.1.p 87 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 174 7*************************************8766667789999******************999987..66678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-25 | 85 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010431 | Biological Process | seed maturation |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MEDDEDIRSR GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPANSSQKD PDALALALLP 60 IQASGGSGGG ANSSSGRPTG GGGREDCWSE GATAVLIDAW GERYLELSRG NLKQKHWKEV 120 AEIVSSREDY GKIPKTDIQC KNRIDTVKKK YKQEKVRIAT GGGRSRWVFF DKLDRLIGST 180 AKISTATPGV SGGGGPGVGG GLHKIPMGIP MGTRSNLYHH QAKAAAATPS FNNLDRLIGA 240 TARVSAASFG GSSGGGGGSV NVPMGIPMSS RSSPFGQQGR TLPQQSRTLP QQQQQGMVVK 300 RCNESKRWRF RKRNASESDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKR QDGDGVGNKW 360 RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKEME LQRMQFFVKT QLEISQLKQQ 420 HGGRLGNTTS NDHHSRKNNN INGIVNNSNN NVGNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3631s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000600 | 0.0 | AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2. | |||
GenBank | AY072187 | 0.0 | AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds. | |||
GenBank | AY113853 | 0.0 | AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299177.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 0.0 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | R0I2F4 | 0.0 | R0I2F4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3631s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6262 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 0.0 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3631s0005.1.p |