PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3631s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 313aa MW: 34823 Da PI: 7.9197

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3631s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.9	6.4e-14	51	139	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+++ + +Li+a e+ +l+rg+lk+ +W+ev++ + r+ ++ +qCk++++ ++k++k++k+ + ++ s++ +f++l+ Cagra.3631s0002.1.p 51 CWSEEATETLINAWGERFLKLKRGNLKQEHWKEVAEIVnRDNETAKTDTQCKNRIDTVKKKFKQEKAKIAAGgcDEDCNSKWIFFEKLQ 139 7***********************************888899******************998888444566789***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-22	50	140	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEEDDGTQSH PSSGDPSTAK SCARGGLAIV VSPPSKAASG RRTGGGGRDD CWSEEATETL 60 INAWGERFLK LKRGNLKQEH WKEVAEIVNR DNETAKTDTQ CKNRIDTVKK KFKQEKAKIA 120 AGGCDEDCNS KWIFFEKLQH LIGGATTASK ALKVTPLSSR SNLYQRQAKS FSTGVKRSGG 180 GDSTRWHFRK RVASETESES EPDLSADSVD SLPQPLLLPL PVDVDNKTEP GEVAMAILGF 240 AESYEKVETL KLKQMVELER ERMKFVKELE LQRMQFFTAQ LEMLRNSLED REGERRIRSH 300 HNHSVNNNGN VS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3631s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641742.1	0.0	trihelix transcription factor ASIL1
Swissprot	Q9SYG2	2e-79	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	R0I7T6	0.0	R0I7T6_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.3631s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	3e-71	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Phytozome	Cagra.3631s0002.1.p