PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3534s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 329aa    MW: 36780.5 Da    PI: 6.0908
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3534s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32194249156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  Cagra.3534s0002.1.p 194 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 249
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.451191251IPR017930Myb domain
SuperFamilySSF466895.64E-18192252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-28193252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26194249IPR006447Myb domain, plants
PfamPF002493.0E-9196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGSLGDELSL GSICGSQRGV LKIIMNVEKL EEEKRKIESS QLELPLSLQI LNDAILYLKE  60
ENKKCSEMDT QPLLKDFISL DKPIREEIDD LQLLKRDDEL TREKKFQQWR ANDDHISNNK  120
IKNKLAIQRN GEKSSMLLIP KVETGLGLGL TTSSMRRKGV VASCGFTSSD SMSQPQPLPP  180
PQQPAFLQQQ ALRKQRRCWT PELHRRFVDA LQQLGGPGVA TPKQIREHMQ EEGLTNDEVK  240
SHLQKYRLHI RKPNSNAEKQ SAVVLGFNLW NSSSQEVEET REGGGESSKI INSQSDSPQG  300
PLQLPSTTTT TGGDSSMEDV EDAKSESY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3534s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645453.10.0transcription factor HHO6 isoform X1
SwissprotQ9FX841e-164HHO6_ARATH; Transcription factor HHO6
TrEMBLR0IIC60.0R0IIC6_9BRAS; Uncharacterized protein
STRINGCagra.3534s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-143G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]