PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3519s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 744aa    MW: 83332.7 Da    PI: 7.9722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3519s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-17323422198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++  +++++e++ l+++d+ g++W++++++  +++s+ yvl+ G +   ++ gL++gD+v+F++ +
  Cagra.3519s0007.1.p 323 FEKILSASDTGRVGRLVVPKKCAEAFfpQISHPEGVPLKIQDPMGKEWTFQFRFwpNNNSRIYVLE-GVNPCIQSLGLQTGDSVIFSRLD 411
                          99**************************8889999*****************99666666669999.********************665 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Cagra.3519s0007.1.p 412 -PERKLILGFRK 422
                          .56666666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-28312429IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-21321422No hitNo description
SuperFamilySSF1019366.8E-20321422IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152323424IPR003340B3 DNA binding domain
PfamPF023621.1E-14323422IPR003340B3 DNA binding domain
SMARTSM010196.2E-20323424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MFSSSSMSSS SSSFSSRFCF NHECFEFKLD HCRPGWRLRT GDFVDLCDRC ASLYEQGKFC  60
DVFHQKASGW RCCESCGKRI HCGCIVSASA YMLLDAGGIE CLACARKKVA LGPNFPPSPS  120
FLFQSPISEK FKDLSINWSS STRSNQISFQ PPSCLGPSVL QFDLRNRGDN NEFSQPTSKE  180
RATACSMEKK RGINNLIGKL MSENMQKYKV SPFPNGPNIN VYHPCGTQLA FPVPITTPIE  240
KTGHSRLSGS HLWQTPNCSP LSHLHYDLNG GADSLLESKS RNVRTQLDAP GKYQVVPQYW  300
PKVSNKNQQN QSKESESIVT HLFEKILSAS DTGRVGRLVV PKKCAEAFFP QISHPEGVPL  360
KIQDPMGKEW TFQFRFWPNN NSRIYVLEGV NPCIQSLGLQ TGDSVIFSRL DPERKLILGF  420
RKAAIAQSSD QETNSTNNNR DTCTNRDAEP ADMHSLSEVK KSTYITKETP GVEFSSGKKN  480
SSMMITRGKR RKVEKGDHIE LRLTWEEAQG FLLPPPNLTP SKVVIDDYEF EEYEDAPIIG  540
KPIDDTGFRS TCTPDQKLVA QQQNEEAMEE AERLLMSPKT TTKHPRHRNG CSCIVCIQSP  600
SGAGPKHDRR CSCAVCEAVK RRRHSLLLRR EKKQMGKEDN AHKELEQPNS DDELQQSANN  660
SENHECHTSP LKVQLDLNFK PEKDGESLPD SNKTSKKKTL HHDDTLNSSF NSPSSSTAHS  720
QINREEEELK KNTEIADTTT SSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-503014261126B3 domain-containing transcription repressor VAL1
5yzz_C2e-503014261126B3 domain-containing transcription repressor VAL1
5z00_C2e-503014261126B3 domain-containing transcription repressor VAL1
5z00_G2e-503014261126B3 domain-containing transcription repressor VAL1
5z00_K2e-503014261126B3 domain-containing transcription repressor VAL1
5z00_M2e-503014261126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3519s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226031e-120AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615551e-120AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026871e-120CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283162.20.0B3 domain-containing transcription factor VAL3 isoform X1
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3519s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3