PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3501s0157.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 364aa MW: 41940.8 Da PI: 7.056

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3501s0157.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9.5e-27	88	169	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++ s +++y++++e Cagra.3501s0157.2.p 88 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 169 ******************************************************************84...566899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-4	78	149	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	80	144	IPR017877	Myb-like domain
SMART	SM00717	0.0096	84	146	IPR001005	SANT/Myb domain
CDD	cd12203	1.46E-29	86	151	No hit	No description
Pfam	PF13837	3.5E-20	87	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MFISDKSRPT DFYKDDNPNS STAATRDMMI DVTTPNEAVV DLQPHHHHHH HHNHNHHLHQ 60 SQPQQILLGD SSSEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI 120 SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KYHDRGNGSA KMSYYKEIED ILRERSKKVT 180 TTQYNKSPST PPPTTAKVDS FMQFSDKGFD DTSISFGSVE GGDGHGQPFG GRVITVKFGD 240 YTRRIGIDGS CEAIKEAIRS AFGLRTRRAF WLEDEDQIVR SLDREMPLGN YLLHLDDGLA 300 IRVCHYDESN QLPVHSEEKI FYTEEDYRDF LARRGWTCLQ VDGFRNIENM DDLQPGAVYR 360 GVR*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MFISDKSRPT DFYKDDNPNS STAATRDMMI DVTTPNEAVV DLQPHHHHHH HHNHNHHLHQ  60
SQPQQILLGD SSSEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI  120
SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KYHDRGNGSA KMSYYKEIED ILRERSKKVT  180
TTQYNKSPST PPPTTAKVDS FMQFSDKGFD DTSISFGSVE GGDGHGQPFG GRVITVKFGD  240
YTRRIGIDGS CEAIKEAIRS AFGLRTRRAF WLEDEDQIVR SLDREMPLGN YLLHLDDGLA  300
IRVCHYDESN QLPVHSEEKI FYTEEDYRDF LARRGWTCLQ VDGFRNIENM DDLQPGAVYR  360
GVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-55	82	167	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3501s0157.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT011979	0.0	BT011979.1 Arabidopsis thaliana At1g13450 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645390.1	0.0	trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	R0IPF9	0.0	R0IPF9_9BRAS; Uncharacterized protein
STRING	Cagra.3501s0157.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.2	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cagra.3501s0157.2.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]