PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3501s0157.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 408aa MW: 46697 Da PI: 6.9942 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.7 | 1.1e-26 | 88 | 169 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++ s +++y++++e Cagra.3501s0157.1.p 88 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 169 ********************************************************************84...566899***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-4 | 78 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 80 | 144 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0096 | 84 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.72E-30 | 86 | 151 | No hit | No description |
Pfam | PF13837 | 4.3E-20 | 87 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MFISDKSRPT DFYKDDNPNS STAATRDMMI DVTTPNEAVV DLQPHHHHHH HHNHNHHLHQ 60 SQPQQILLGD SSSEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI 120 SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KYHDRGNGSA KMSYYKEIED ILRERSKKVT 180 TTQYNKSPST PPPTTAKVDS FMQFSDKGFD DTSISFGSVE ANGRPALNLE RRLDHDGHPL 240 AITTVDAVAA NGVTPWNWRE TPGNGGDGHG QPFGGRVITV KFGDYTRRIG IDGSCEAIKE 300 AIRSAFGLRT RRAFWLEDED QIVRSLDREM PLGNYLLHLD DGLAIRVCHY DESNQLPVHS 360 EEKIFYTEED YRDFLARRGW TCLQVDGFRN IENMDDLQPG AVYRGVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-55 | 82 | 167 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3501s0157.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228305 | 0.0 | AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307687.1 | 0.0 | trihelix transcription factor GT-1 isoform X1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | R0IPF9 | 0.0 | R0IPF9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3501s0157.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3501s0157.1.p |
Publications ? help Back to Top | |||
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