PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3501s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 29437.8 Da PI: 7.7838 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 24 | 77 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR Cagra.3501s0036.1.p 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.413 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 20 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 24 | 76 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.58E-15 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-8 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRCGRSSDG GMGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGSRL TLFGKPEESS SPSSRIRRRR QDNEEDHLHD NLSVHARNDC 120 LLGFHSFNFR EQTDNDDDDF LNIMNMERAK KTFAGYAESI KFQSHHFLEA ESRKSNWKNT 180 WREDEHEEEE EELSLSLSLN HPHDKQQRWK SNNATSSLSE TSEAVSSSSA PFIFRDCFAS 240 SKIDLNLNLS FSLLRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 25 | 79 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3501s0036.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630486 | 0.0 | AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303284.1 | 1e-154 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 1e-130 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0GJS6 | 1e-153 | R0GJS6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3501s0036.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-117 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3501s0036.1.p |