PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3501s0027.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 279aa    MW: 31060.3 Da    PI: 10.2698
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3501s0027.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind358.71.2e-10912781301
            GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkl 81 
                          mdddg+  rn+gyyepa a++k nlglqlms+i +r++k+    r+ nl ++++++++++++    m++    +++++       +++k+
  Cagra.3501s0027.2.p   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHHQEppihMSY----NWINQ-------QKDKF 75 
                          99**99..9*******999**************.9**************.************5555555....*****.......899** PP

            GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                          +++l+v+++     p++ +vl++t+s+ s+q+  ++++q+e+++v+        + ++++ ++++k++k++   + ++ +k+kk +k+k+
  Cagra.3501s0027.2.p  76 FNMLPVTTA-----PNYGNVLPETSSAPSMQMnlHHHHQTEENPVK-------LEDEVVQPNNNNKKRKTNP--KAGSATKAKKPRKPKD 151
                          *****9997.....9*****************85556899999988.......3345555555555555444..5677788888889988 PP

            GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                          +++   ++++++   +r+k  kks+d+v+ngvs+D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grK
  Cagra.3501s0027.2.p 152 ENS---NNNNTNV--SRVKPAKKSVDMVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRK 236
                          432...2333333..689************************************************************************ PP

            GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          mSqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir
  Cagra.3501s0027.2.p 237 MSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 278
                          *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.7E-1001278IPR010409GAGA-binding transcriptional activator
SMARTSM012262.8E-1721278IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHHQEPP  60
IHMSYNWINQ QKDKFFNMLP VTTAPNYGNV LPETSSAPSM QMNLHHHHQT EENPVKLEDE  120
VVQPNNNNKK RKTNPKAGSA TKAKKPRKPK DENSNNNNTN VSRVKPAKKS VDMVINGVSM  180
DISGLPVPIC TCTGAPQQCY RWGCGGWQSA CCTTNISMHP LPMSTKRRGA RISGRKMSQG  240
AFKKVLEKLA SDGFNFGNPI DLKSHWARHG TNKFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3501s0027.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3070440.0DQ307044.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) gene, complete cds.
GenBankDQ3070450.0DQ307045.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305511.10.0protein BASIC PENTACYSTEINE2
RefseqXP_006305512.10.0protein BASIC PENTACYSTEINE2
SwissprotQ9LDE20.0BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLQ2PQR30.0Q2PQR3_9BRAS; GAGA-binding transcriptional activator
STRINGCagra.3501s0027.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-178basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]