PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3356s0071.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 346aa    MW: 38165.7 Da    PI: 5.789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3356s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  Cagra.3356s0071.1.p 15 KGPWMQEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.21.6e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++ eE+  +++++++lG++ W++Ia +++ gRt++++k++w++++
  Cagra.3356s0071.1.p  68 RGKFSDEEESTIIRLHALLGNK-WSKIAGHLP-GRTDNEIKNYWNTHM 113
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0761062IPR017930Myb domain
SuperFamilySSF466893.74E-2912109IPR009057Homeodomain-like
SMARTSM007179.8E-111464IPR001005SANT/Myb domain
PfamPF002491.7E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221669IPR009057Homeodomain-like
CDDcd001675.59E-91762No hitNo description
PROSITE profilePS5129427.33363117IPR017930Myb domain
SMARTSM007174.6E-1667115IPR001005SANT/Myb domain
PfamPF002495.3E-1668112IPR001005SANT/Myb domain
CDDcd001671.61E-1270113No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMQ EEDDKLTAYI NENGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGK FSDEEESTII RLHALLGNKW SKIAGHLPGR TDNEIKNYWN THMRKKLLQM  120
GIDPMTHEPR TNELSPILDV SQMLVAAINN GQFGNNNLFN NSTTALEDLL KLQLIHKMLQ  180
IISPKAVPNI NSFNTATSVN PKPDTTVPHV FINQSGITHE AATSDLISSY DNVWDGIEDN  240
QLPGLVTVSQ ESLNAAKPGT STTTEGNDQT GAGYYPDQLH EIPSFGSVSV SPVTSGLNHP  300
GTAQHSSAGS DVLEDWGKFL DDETSDSCWK SFLDLTSPTS SPLPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-26151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-26151174105C-Myb DNA-Binding Domain
1msf_C4e-26151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3356s0071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankAY5502970.0AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285445.10.0transcription factor MYB39
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLR0H4840.0R0H484_9BRAS; Uncharacterized protein
STRINGCagra.3356s0071.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39