PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3356s0061.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 328aa    MW: 37662.6 Da    PI: 7.477
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3356s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.2e-31170223255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Cagra.3356s0061.1.p 170 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 223
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.2E-15167224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27168224IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23170224IPR006447Myb domain, plants
PfamPF002491.0E-6171222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELFPSQPDL YLKISRRREE EEEEEEEEKE NQEQEDERRL GFRSKASDSE RNSSGNLIHN  60
LQFTSNSELT KVDKNHQEHS KSLDQDLRSM LMMRPIRGIP LYQNQVLDHH YYYSSTSPTP  120
FFFSEVNGQQ HASRRVITNP NCSFNFHHRN RRQAQPQPPR FTAKRGVRAP RMRWTTTLHA  180
HFVHAVQLLG GHERATPKSV LELMDVQDLT LAHVKSHLQM YRTIKSTEKP TTSSGQSDTC  240
ENGTQVNSER EARDVQGLWN NSSSEARFQL KAKASSGVDI SFNENKWKKM DGRCASNERL  300
SSDSSSLTGT RPDTETPNLE FTLATPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-16171225357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-16171225357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-16171225357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-16171225357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-16171225458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3356s0061.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284129.10.0probable transcription factor KAN3
SwissprotQ941I20.0KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0F5I80.0R0F5I8_9BRAS; Uncharacterized protein
STRINGCagra.3356s0061.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-162G2-like family protein