PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3356s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29158.9 Da PI: 8.7855 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 150 | 200 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Cagra.3356s0041.1.p 150 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 200 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.35E-32 | 149 | 208 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 149 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-41 | 150 | 214 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-14 | 150 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-23 | 150 | 210 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.276 | 150 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 151 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 174 | 190 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSMMAGTQSD YAFLESIRRH LLGETEMRLS ESITSSVEQS CTTGNSVLKP VYGRNPSFGK 60 LYPCFTESWG DLPLKENDSE DMLVYGILND AFHGGWEPSS SSSDEDRSSF PAVKVESPES 120 FSFGAVDSVP AKKETSPVVP VAAAVAKGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT 180 FETAEDAALA YDRAAFRMRG SRALLNFPLR VNSGEPDPVR IKSKRASSSE NGAPKKRRTV 240 AAGDGAGKGL TVKCEMVEVT RGDRLLVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-44 | 146 | 215 | 1 | 70 | ATERF1 |
3gcc_A | 2e-44 | 146 | 215 | 1 | 70 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 239 | PKKRRTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3356s0041.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008103 | 0.0 | AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds. | |||
GenBank | AL161546 | 0.0 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. | |||
GenBank | AY058174 | 0.0 | AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds. | |||
GenBank | AY062533 | 0.0 | AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT002578 | 0.0 | BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97343 | 0.0 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284323.1 | 0.0 | ethylene-responsive transcription factor 1A | ||||
Swissprot | O80337 | 1e-152 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | R0F6Q2 | 0.0 | R0F6Q2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3356s0041.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-141 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3356s0041.1.p |
Publications ? help Back to Top | |||
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