PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3264s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 716aa    MW: 80438 Da    PI: 5.7284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3264s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.54.4e-1133397121373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  v+P+
  Cagra.3264s0006.1.p 339 LRTMLVSCAQAVSINDRRTADDLLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCPF 425
                          5789**************************************************************9999...9**************** PP

                 GRAS  91 lkfshltaNqaIleav..egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           k++ + aN+ I++ +  ++ +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak++e++++pf
  Cagra.3264s0006.1.p 426 KKIAIIFANHSIMQLAsiANTKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCEKFHIPF 515
                          ************886511566******************************************99************************* PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          e+n+ +a+++e+++le+L++k+gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v+       ++n++ F++rf e l +ys+
  Cagra.3264s0006.1.p 516 EYNA-IAQKWETIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIRKIKPDVFMPGILSGSYNAPFFVTRFREVLFHYSS 604
                          ****.7************************************************************************************ PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                          lfd+ +++l+re+  r + E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll+++ +  +++ v+++ 
  Cagra.3264s0006.1.p 605 LFDMCDTNLAREDPMRLMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKDLVQKLKLLVENGYkTKEFDVDQDC 694
                          ****************************************************************************9988999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaW 373
                          ++l++gWk+r +++ S+W
  Cagra.3264s0006.1.p 695 NWLLQGWKGRIVYASSVW 712
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.422313692IPR005202Transcription factor GRAS
PfamPF035141.5E-110339712IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGSYPAGFPG SLEYWFDFPG LGNGFYLNDQ PLLDTGSVPD VPPPPEPYSQ QHLASADADF  60
SDSVLQYINQ VLMEEDIEDK PCMFHDALSL QAAEKSLYEA LGEKYPPDDD SQPMVPTTRP  120
AQLVSSPSSS SYASSTTTST SSDSQWSFDC LENNRPSSWL QTPIPSNFVF QSTSTKTSPQ  180
SVVGGGGGNA VFGSSYSNDL VSNMFNDSEL ALQFKKGMEE ASKFLPKSSQ MVIDVENFIP  240
EKDNSVPYRL TGKKSNWRED EHLAEERSKK QPAVYVDEAE LTDMFDKILI FGEAKEQPVC  300
ILNESFSKEP AKALSVSKSQ KGEKPAASGN AYTKETPDLR TMLVSCAQAV SINDRRTADD  360
LLSRIRQHSS SYGDGTERLA HYFANSLEAR LAGIGTQVYT ALSSKKTSAS DMLKAYQTYI  420
SVCPFKKIAI IFANHSIMQL ASIANTKTIH IIDFGISYGF QWPSLIHRLA WRRGSSCKLR  480
ITGIELPQRG FRPAEGVIET GHRLAKYCEK FHIPFEYNAI AQKWETIKLE DLKLKEGEFV  540
AVNSLFRFRN LLDETVAVHS PRDAVLKLIR KIKPDVFMPG ILSGSYNAPF FVTRFREVLF  600
HYSSLFDMCD TNLAREDPMR LMFEKEFYGR EIMNVVACEG TERVERPESY KQWQARAMRA  660
GFRQIPLEKD LVQKLKLLVE NGYKTKEFDV DQDCNWLLQG WKGRIVYASS VWVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-463437128374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3264s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639729.10.0scarecrow-like protein 33 isoform X1
RefseqXP_023639730.10.0scarecrow-like protein 33 isoform X1
RefseqXP_023639732.10.0scarecrow-like protein 33 isoform X1
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLR0HTI10.0R0HTI1_9BRAS; Uncharacterized protein
STRINGCagra.3264s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein