PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2935s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 345aa    MW: 37330.5 Da    PI: 8.7016
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2935s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.11.5e-38511872135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..k 89 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++  +++++s++++ + s +  +
  Cagra.2935s0020.1.p  51 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNANFPTDDDDSQNQTLSRSVAaaN 139
                          689*************************************************************.4444344444444444434433665 PP

                  TCP  90 aaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                          + +++a +s++++++++s l+l++ e r kar+rarert+++ + +++
  Cagra.2935s0020.1.p 140 SLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDH 187
                          5566665778888888889999999***************99988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-3852184IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22153111IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205164185IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFPKLGDDDE MIGDLMKNNN NGDVVDNNNN GNRLSRWHHN SSRIIRVSRA SGGKDRHSKV  60
LTSKGPRDRR VRLSVSTALQ FYDLQDRLGY DQPSKAVEWL IKAAEDSISE LPSLNNANFP  120
TDDDDSQNQT LSRSVAAANS LSKSACSSNS DTSKNSSGLS LSRSELRDKA RERARERTAK  180
ETKERDHQSH TSFTDLLNSG SDPVNSNRQW MAQAPAPAPS SSPMEYFSSG LILGSAFNLD  240
FNMSTSSGAG AAVSAASGGG FSGFNRGTLQ SNSTSNHHHQ SFLANLHRFP TASEGGGGGG  300
GGPQFLFGAL PAENHHHHQH NHQFQLYYEN GCRNSSDHKG KGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2358112155Putative transcription factor PCF6
5zkt_B1e-2358112155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2935s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283886.10.0transcription factor TCP2
SwissprotQ93V431e-175TCP2_ARATH; Transcription factor TCP2
TrEMBLR0GIV60.0R0GIV6_9BRAS; Uncharacterized protein
STRINGCagra.2935s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-106TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]