PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2925s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 28570 Da PI: 7.4285 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 100 | 119 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg Cagra.2925s0033.1.p 100 CPAFRN-GACHRGDSCEFAHG 119 666666.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.0E-4 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 99 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 22 | 129 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLKSVSPMAF YDIGEQQYST LGYIVSKPAI GNGGVYDLDP PIPTIDDAIY GSDEFRMYAY 60 KIKRCPRTRS HDWTECPYAH RGEKATRRDP RRYTYCAVAC PAFRNGACHR GDSCEFAHGV 120 FEYWLHPARY RTRACNAGNL CQRKVCFFAH APEQLRQSEG KHRCRYAYRP VRARGGNSNG 180 VAMRMDGEDY DTSRSPEKSG KSVGLDSNEE KVLLKCWSRM SIVDDHYEPS DFDLDLDLSH 240 FDWISELID* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2925s0033.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254592 | 0.0 | AC254592.1 Capsella rubella clone CAP08-D18, complete sequence. | |||
GenBank | AY350713 | 0.0 | AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286651.1 | 0.0 | zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 1e-165 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | Q6V5F9 | 0.0 | Q6V5F9_9BRAS; Zn-finger transcription factor | ||||
STRING | Cagra.2925s0033.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11527 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-157 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2925s0033.1.p |