PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2925s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39173.3 Da PI: 8.9943 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 4.1e-56 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+kkv + +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Cagra.2925s0018.1.p 18 LPPGFRFHPTDEELISHYLHKKVLDIAFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 106 79**************************99.88***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfy+grapkg kt+Wvmheyrl Cagra.2925s0018.1.p 107 EIYR-GKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRL 143 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-63 | 14 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.099 | 18 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-29 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
METFGGFHYK EDDEQMDLPP GFRFHPTDEE LISHYLHKKV LDIAFSAKAI GEVDLNKAEP 60 WELPYKAKMG EKEWYFFCVR DRKYPTGLRT NRATQAGYWK ATGKDKEIYR GKSLVGMKKT 120 LVFYRGRAPK GLKTNWVMHE YRLDGKLSAH NLPKTAKFLG FGSICQNEWV ICRVFHKTAG 180 GKKIPISTLI RIGSYGTGSS LPPLTDSSTY SDKTKTEPVY VPCFSNQAET RGTTILNCFN 240 NSSLSSIQPD FLQMIPLYQP QYSLNVSDNL QGSSPALTQD QSALQAMMEN NKRQSFKTLN 300 ISQETGAASN TDNTSSVFEF GRKRFDHQEV PSSSAGPIDL EPFWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 15 | 183 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2925s0018.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY350713 | 0.0 | AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288140.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | R0HBK3 | 0.0 | R0HBK3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2925s0018.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2925s0018.1.p |
Publications ? help Back to Top | |||
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