PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.2637s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 581aa MW: 62383 Da PI: 7.5985 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.7e-09 | 378 | 410 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + Cagra.2637s0010.1.p 378 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 410 89*****************************87 PP | |||||||
2 | BELL | 112.5 | 2.2e-36 | 232 | 300 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY++lAlka+S+hF+cLk+ai++q+ Cagra.2637s0010.1.p 232 DNGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYATLALKALSKHFKCLKNAITDQL 300 5789**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-69 | 172 | 298 | IPR006563 | POX domain |
Pfam | PF07526 | 3.0E-34 | 177 | 297 | IPR006563 | POX domain |
SMART | SM00389 | 4.0E-9 | 354 | 418 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-11 | 354 | 415 | No hit | No description |
SuperFamily | SSF46689 | 9.84E-17 | 356 | 421 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-27 | 358 | 418 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 371 | 410 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.645 | 373 | 414 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 581 aa Download sequence Send to blast |
MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPPSSS SGGGGGGSGV FPLADSDFLA 60 AGGFHSNNNN NNHMSNPSYS NFMGFLGGPS SSSSTAVAVA GDHSFNAGLS SGDVLVFKPE 120 PLSLSLSSHP RLAYDLLVPG VVNSGFCRSA GDANAGAVTV ASRSSGPLGP FTGYASILKG 180 SRFLKPAQML LDEFCNVGRG IYTDKVIDDD DSSLLFDPTV ENLCGVSDGG GDNGKKKSKL 240 ISMLDEVYKR YKQYYEQLQA VMGSFECVAG LGHAAPYATL ALKALSKHFK CLKNAITDQL 300 QFSHDNKIQQ QQCGHPMNSE NKTDSLRFGG SDSSRGFCSA GQRHGFPDHH APVWRPHRGL 360 PERAVTVLRA WLFDHFLHPY PTDTDKLMLA KQTGLSRNQV SNWFINARVR VWKPMVEEIH 420 MLETRQTQRS SSSSWRDERS STTVFPDNNN PSSSAAHQRA NNSSPARRAR NDDVHGTTDN 480 NSYVNTGSGN AVGFSYGIGS SNVPVMSNST NGGVSLTLGL HHQIGLPEPF PMTTAQRFGL 540 DGGSGDGGGH GGGGYEGQNR QFGRDFIGGS NHQFLHDFVG * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 8e-17 | 360 | 418 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 8e-17 | 360 | 418 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 7e-17 | 360 | 418 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 7e-17 | 360 | 418 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.2637s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT020537 | 0.0 | BT020537.1 Arabidopsis thaliana At5g02030 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023637653.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 0.0 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | R0FE52 | 0.0 | R0FE52_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2637s0010.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02030.1 | 0.0 | TALE family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.2637s0010.1.p |