PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.2629s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28247 Da PI: 7.0755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll++++ ++G g W+ ++ + g++R++k+c++rw++yl Cagra.2629s0007.1.p 10 KGAWTAEEDALLKQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Cagra.2629s0007.1.p 63 RGKLSTDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 5 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.516 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.12E-28 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.65E-11 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 61 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.423 | 62 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-14 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.04E-11 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MEGSSKGLTK GAWTAEEDAL LKQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS 60 IKRGKLSTDE VDLLIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KTESCCKTKM 120 RKKNIISHPT TTMVQKINVF KPRPRSFTAN NPFCSHLNGQ PEVDVIPSSN GLKNNDVCEN 180 SITFDKDDDD FINNLIIEDN MWLENLLDES QEPDAIVPEA TTSDQGDTMA FDVEHLWSLF 240 NGETVELD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 8 | 114 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.2629s0007.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023643848.1 | 1e-165 | transcription factor MYB90 | ||||
Swissprot | Q9ZTC3 | 1e-131 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | R0I998 | 1e-156 | R0I998_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2629s0007.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-133 | myb domain protein 90 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.2629s0007.1.p |