PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2622s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 49524.6 Da PI: 5.9689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 7 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f +tG C++ ++C+FaHg Cagra.2622s0030.1.p 7 YKTKLCILFKKTGNCSR-PNCSFAHG 31 9****************.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.4E-6 | 4 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-12 | 4 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0045 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-7 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MSGSSMYKTK LCILFKKTGN CSRPNCSFAH GTAELRRPGE SSFPGRRYNM DCDLRDRLGR 60 QFSPERRPSL DRSGRRLQRF NGHENARPFD NRREKDFREN HRFDERRDYA GGLKVGNRIE 120 DRAEDGRNKF QGYNNVLEEQ LKDVEMDVKM LTDDKLRLEA SVERKAQEVD ILTSRMQELE 180 NQLDREKEEC RRITSSTKKF VKEYNRFLRA QDDLKRSEAR LQKLGNQLST YLAGSEGKNR 240 DGNVDIVSDE ENNGRNLSIA CDPQNELQNT SSMSRKKRYV DQYTTKETVE DGFIGRGEQE 300 KMEKEKEKKR PSRWNTVSSK SYSEEESGAW NDEDTINKSS SKEDNWKRRR YSIGTSSTDK 360 VISSTSMAAR VFDDVAEFEE EIPEAAKSSP LISLPPPPPL RDTHVQGEEA DVNVDVMEQG 420 KANDLDDSD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2622s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059899 | 0.0 | AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds. | |||
GenBank | AY128791 | 0.0 | AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299351.1 | 0.0 | zinc finger CCCH domain-containing protein 40 isoform X1 | ||||
Swissprot | Q93XW7 | 0.0 | C3H40_ARATH; Zinc finger CCCH domain-containing protein 40 | ||||
TrEMBL | R0HR33 | 0.0 | R0HR33_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2622s0030.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10069 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2622s0030.1.p |