PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2564s0022.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 779aa MW: 90096.8 Da PI: 6.6357 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.7 | 4.1e-28 | 34 | 138 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgk 75 +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g++++ek++ +++ r +r++++t+Cka+l+vk+++dg+ Cagra.2564s0022.4.p 34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTEKDDidtglgtggfsipqaRKRGRINRSSSKTDCKACLHVKRRQDGR 123 6*******************************************999************998889999********************** PP FAR1 76 wevtkleleHnHela 90 w++ +l +eHnHe++ Cagra.2564s0022.4.p 124 WVIRSLIKEHNHEIF 138 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-26 | 34 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-21 | 227 | 318 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 510 | 546 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.9E-6 | 521 | 548 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 9.0E-6 | 522 | 544 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MPSGECSNVA LDDHMIDLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK 60 FIDAKFVCTR YGSKKTEKDD IDTGLGTGGF SIPQARKRGR INRSSSKTDC KACLHVKRRQ 120 DGRWVIRSLI KEHNHEIFTG QANSIRELGG RKKLEKQNGA IVKEVKSRKL LALEDGDVER 180 LLNFFTDMQV ENPFFFYSIN LSEEQILRNV FWVDAKGRLD YSWFCDVVSI DTTFIRNEYK 240 LPLIVFTGVN HHGQFLLLGC GLLLTDVSKS GFFWTFRAWL KAMHGCQPRV ILTKHDQALK 300 EAVSEVFPSS RHCFYMWDTL GQMPVKLGHV MRQEKNLMDE IKDAIYGSCK SDEFEKNWWE 360 IIDRFHMRDN VWLQSLYEDR EFWVPVYMKD VSLAGMCTAQ RSESVNSVFD KYIQRKTTLK 420 AFLDQYKTMI QERYEEEEKA GIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG 480 VACHPKKEGE EDGANKSTFR VQDYEQNRAF VVGWNSGSSE VVCSCRLFEF KGFLCRHAMI 540 VLQMSGELSI PSQYVLKRWT KDAKSKIFME SDQIDVESTK AQRYTDLCLR SLKLSEEASL 600 FEESYNTVTN VLNEALRKCE NKSNLIQNVE ESELVIAQDL PIHDEQYNTY EMNGDNNVAD 660 TGQEHSLEEV WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINPIASNRN GYCTVHPNIH 720 SMGKSITHQR LYGTEELSFR PEAMYERLED MGESNARHHP QQHCNASNHQ HSNSNFTH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 156 | GRKKLEKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2564s0022.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL021637 | 0.0 | AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project). | |||
GenBank | AL161552 | 0.0 | AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_023634666.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_023634667.1 | 0.0 | protein FAR1-RELATED SEQUENCE 1 | ||||
Swissprot | Q5UBY2 | 0.0 | FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | R0GY70 | 0.0 | R0GY70_9BRAS; Uncharacterized protein | ||||
STRING | XP_006283160.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19990.2 | 0.0 | FAR1-related sequence 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2564s0022.4.p |