PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2564s0022.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 782aa    MW: 90498.3 Da    PI: 6.6357
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2564s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.74.1e-2834138190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgk 75 
                          +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g++++ek++               +++ r +r++++t+Cka+l+vk+++dg+
  Cagra.2564s0022.1.p  34 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTEKDDidtglgtggfsipqaRKRGRINRSSSKTDCKACLHVKRRQDGR 123
                          6*******************************************999************998889999********************** PP

                 FAR1  76 wevtkleleHnHela 90 
                          w++ +l +eHnHe++
  Cagra.2564s0022.1.p 124 WVIRSLIKEHNHEIF 138
                          ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2634138IPR004330FAR1 DNA binding domain
PfamPF105511.2E-21227318IPR018289MULE transposase domain
PROSITE profilePS509669.878510546IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6521548IPR006564Zinc finger, PMZ-type
PfamPF044349.0E-6522544IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MPSGECSNVA LDDHMIDLEI NEGREFESKE EAFEFYKEYA NSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTEKDD IDTGLGTGGF SIPQARKRGR INRSSSKTDC KACLHVKRRQ  120
DGRWVIRSLI KEHNHEIFTG QANSIRELGG RKKLEKQNGA IVKEVKSRKL LALEDGDVER  180
LLNFFTDMQV ENPFFFYSIN LSEEQILRNV FWVDAKGRLD YSWFCDVVSI DTTFIRNEYK  240
LPLIVFTGVN HHGQFLLLGC GLLLTDVSKS GFFWTFRAWL KAMHGCQPRV ILTKHDQALK  300
EAVSEVFPSS RHCFYMWDTL GQMPVKLGHV MRQEKNLMDE IKDAIYGSCK SDEFEKNWWE  360
IIDRFHMRDN VWLQSLYEDR EFWVPVYMKD VSLAGMCTAQ RSESVNSVFD KYIQRKTTLK  420
AFLDQYKTMI QERYEEEEKA GIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG  480
VACHPKKEGE EDGANKSTFR VQDYEQNRAF VVGWNSGSSE VVCSCRLFEF KGFLCRHAMI  540
VLQMSGELSI PSQYVLKRWT KDAKSKIFME SDQIDVESTK AQRYTDLCLR SLKLSEEASL  600
FEESYNTVTN VLNEALRKCE NKSNLIQNVE ESELVIAQDL PIHDEQYNTY EMNGDNNVAD  660
TGQEHSLEEV WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINPIASNRN GYCTVHPNIH  720
SMGKSITHQR LYGTSWQEEL SFRPEAMYER LEDMGESNAR HHPQQHCNAS NHQHSNSNFT  780
H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156GRKKLEKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2564s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216370.0AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBankAL1615520.0AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283160.10.0protein FAR1-RELATED SEQUENCE 1
RefseqXP_023634666.10.0protein FAR1-RELATED SEQUENCE 1
RefseqXP_023634667.10.0protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLR0GY700.0R0GY70_9BRAS; Uncharacterized protein
STRINGCagra.2564s0022.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1