PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2527s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 40284 Da PI: 7.1417 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.2 | 2.2e-28 | 26 | 105 | 1 | 83 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l + Cagra.2527s0006.1.p 26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAettttttrqesvN------------ 103 589*********************************************************998773333222222221............ PP TCP 79 sssas 83 ++ Cagra.2527s0006.1.p 104 ---TK 105 ...11 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-32 | 27 | 120 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.297 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV 60 QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTTTTRQE SVNTKPGSPN LVFQRDNNDQ 120 TQFVSANLDS EDAMKTFFPA TTTSSGGGGG GGTNMNFQHY PHHDDDNIVS RTTTTTPQNL 180 SQDLGLSLHP FQGNNNAVVV PETNSFTTTH FDTFGRISGW NHHDLTMTSS SSSEQHEEER 240 SNGGFMVNHH HHHHQHQPSM MTLLNSQQQQ VFLGGQQQQQ QRGTLQSSLF PHSFRSWDHQ 300 TTSDQHHHQH QNQASPVMFA SQFGSHGMMM MQGLSFPNTT RLLHGEEATQ PNSSSPPQNS 360 HL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2527s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005311 | 0.0 | AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence. | |||
GenBank | AY059945 | 0.0 | AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds. | |||
GenBank | BT001194 | 0.0 | BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293485.1 | 0.0 | transcription factor TCP10 | ||||
Swissprot | O82277 | 1e-179 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | R0HQX6 | 0.0 | R0HQX6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2527s0006.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14158 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-148 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2527s0006.1.p |
Publications ? help Back to Top | |||
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