PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2515s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 399aa    MW: 42975.7 Da    PI: 4.9863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2515s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-174994147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Cagra.2515s0014.1.p 49 KGPWSPEEDVVLSKLVDTHGARNWSLIARSIP-GRSGKSCRLRWCNQ 94
                         79******************************.***********985 PP
2Myb_DNA-binding50.74.1e-16101145147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T+ Ed+ ++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Cagra.2515s0014.1.p 101 RNSFTEVEDQAIITAHAIHGNK-WAAIAKILP-GRTDNAIKNHWNST 145
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.3244499IPR017930Myb domain
SuperFamilySSF466897.11E-3046142IPR009057Homeodomain-like
SMARTSM007171.6E-144897IPR001005SANT/Myb domain
PfamPF002491.2E-164994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2450102IPR009057Homeodomain-like
CDDcd001676.38E-145193No hitNo description
PROSITE profilePS5129418.527100150IPR017930Myb domain
SMARTSM007172.3E-15100148IPR001005SANT/Myb domain
PfamPF002491.5E-14101145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21103149IPR009057Homeodomain-like
CDDcd001672.21E-12103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEGEIVRRSE TTGSREVEES TAEVGIGRGD GDDDGAAGTS GRGGKDRVKG PWSPEEDVVL  60
SKLVDTHGAR NWSLIARSIP GRSGKSCRLR WCNQLDPTVI RNSFTEVEDQ AIITAHAIHG  120
NKWAAIAKIL PGRTDNAIKN HWNSTLRRRF MDLEKAKNMG TAGLVVENPG FGVASSEETL  180
SSGGGGQVTT PVVSPEGKEA TSMEICEEQC VEKTNGEGIS KQDGNDPPTL FHQGISKQDV  240
NDPPTLFRPV AQISSFNAYN HMEGSPSPHI QDQNQFQSSK QDAAMLRVLE GVYSELCVPQ  300
TCGGGCCTNN PVGIIQQDSL LGPEFVDYLD PPTFPSYELA AITTDISSLA WLRSGLESSS  360
VRAMEEAAVR LRPQGSRGHR DHYLVSEQGK NITNVLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-38431491107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2515s0014.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0114361e-166AC011436.7 Arabidopsis thaliana chromosome III BAC F3L24 genomic sequence, complete sequence.
GenBankATHMYB1e-166D10936.1 Arabidopsis thaliana atmyb1 gene for ATMYB1 protein, complete cds.
GenBankCP0026861e-166CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297844.10.0transcription factor MYB1
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLR0G5C00.0R0G5C0_9BRAS; Uncharacterized protein
STRINGCagra.2515s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]