PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.25155s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 409aa    MW: 46247 Da    PI: 6.019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.25155s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.53.6e-105274052373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r +++ ++l++a++  + +++ +  ++  l +f++++P+
  Cagra.25155s0006.1.p  27 EQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTSAFLRALLSRAVSKNPTLSSAISFLPPADELHRFSVVELAAFVDLTPW 115
                           79*****************************************************************997666666666677******* PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                           ++f++++aN aIl aveg ++vHi+D+++++++Q p+L++a+a R  ++pp l++T+v+s++++    + ++ee+g++L +fA++ +++
  Cagra.25155s0006.1.p 116 HRFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMARRLnKPPPLLKLTVVSSSDHFppfINISYEELGSKLVNFATTRNIT 204
                           *********************************************966777*********99889999********************* PP

                  GRAS 176 fefnvl...vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                           +ef+++   +++ +++l +++Lr+ p  +Eal+Vn++++l ++++e+++++s   r+ +Lk+++sl+P++v+++e+++d++se++++r+
  Cagra.25155s0006.1.p 205 MEFTIIpstYSDGFSSL-IQQLRIYPsfNEALVVNCHMMLRYIPEETLTSSSssLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRL 292
                           *****988667778888.****************************9998887799********************************* PP

                  GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                            +a++y++  fd++++ +   se+r+++E+e ++++i+nvva+eg+er+er+et+++W er+++a F+ v+++e+a++++k++l++++ 
  Cagra.25155s0006.1.p 293 RSAFNYFWIPFDTTDTFM---SEQRRWYEAE-ISWKIENVVAKEGEERVERTETKRRWIERMRDAEFGGVRVNEEAVADVKAMLEEHAv 377
                           *****************7...9*********.********************************************************* PP

                  GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373
                           ++g++ e++++slvl+Wk++++v++++W
  Cagra.25155s0006.1.p 378 GWGMKKEDDDNSLVLTWKGHSVVFATVW 405
                           **************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.1251385IPR005202Transcription factor GRAS
PfamPF035141.2E-10227405IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTKTRILNPT RLPSLKPLRG CDANFMEQLL LHCATAIDSN DAALAHQILW VLNNTAPPDG  60
DSTQRLTSAF LRALLSRAVS KNPTLSSAIS FLPPADELHR FSVVELAAFV DLTPWHRFGF  120
IAANAAILTA VEGYSTVHIV DLSLTHCMQI PTLIDAMARR LNKPPPLLKL TVVSSSDHFP  180
PFINISYEEL GSKLVNFATT RNITMEFTII PSTYSDGFSS LIQQLRIYPS FNEALVVNCH  240
MMLRYIPEET LTSSSSSLRT VFLKQLRSLN PRIVTLIEED VDLTSENLVN RLRSAFNYFW  300
IPFDTTDTFM SEQRRWYEAE ISWKIENVVA KEGEERVERT ETKRRWIERM RDAEFGGVRV  360
NEEAVADVKA MLEEHAVGWG MKKEDDDNSL VLTWKGHSVV FATVWVPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-542240783474Protein SHORT-ROOT
5b3h_B5e-552240729420Protein SHORT-ROOT
5b3h_E5e-552240729420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.25155s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266230.0AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13.
GenBankAL1329780.0AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0125530.0BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291229.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLR0FNR70.0R0FNR7_9BRAS; Uncharacterized protein
STRINGCagra.25155s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein