PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2495s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 603aa    MW: 66515 Da    PI: 7.3837
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2495s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08260280526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  Cagra.2495s0002.1.p 260 PCPEFRK-GSCPKGDSCEYAHG 280
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.7E-1530180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-1332158IPR020683Ankyrin repeat-containing domain
SMARTSM002487.8E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029713.68176154IPR020683Ankyrin repeat-containing domain
PfamPF136375.1E-977129No hitNo description
CDDcd002046.72E-1278174No hitNo description
SMARTSM002484111143IPR002110Ankyrin repeat
SMARTSM003566.3E-5255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5260281IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465290314IPR000571Zinc finger, CCCH-type
SMARTSM0035637290313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MCGAKSNLCS SNTLTEVEFM RQKSEDEAAV TSLLEFAACD DLSSFRREIE EKSSVGIDET  60
GFWYCRRVGS KKMGFEERTP LMVAAMYGSM EVLNYIIATG KSDVNRVCSD EKVTALHCAV  120
SGCSVSIVEI IKILLDASAS PNCVDTNGNK PVDLLIKASR FVPNQSRKAV EVLLTGINGS  180
VSLMEEEEEV KSVVTKYPAD ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKYPYTCVP CPEFRKGSCP KGDSCEYAHG VFESWLHPAQ YRTRLCKDET  300
GCARRVCFFA HRRDELRPVN ASTGSAMVSP RSSNQSPEMP VMSPLTLGSS PMNSPMSNGG  360
VPLSPRNGGL WQNRVNSLTP PPLQLNGSRL KSTLSARDMD MEMELRFRGL DNRRLGDLKP  420
SNLEETFGSY DSSAVMQLQS PSRHSQMNHY PSSPVRQPPP HGFESSAAMA AAVMNARSSA  480
FAKRSMSFKP APVASSNVSD WGSPNGKLEW GMQREELNKL RRSASFGIHG NNNSVSRPAR  540
DYSDEPDVSW VNSLVKENAP EKALGLNERV GNTVNGAAGR DKFKLPSWAE QMYIDHEQQI  600
VA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2495s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293865.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGCagra.2495s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein