PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.2475s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 310aa MW: 34400.7 Da PI: 4.4129 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.5 | 4.6e-43 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vhk+FGasnv+k+l++lp+++re++++sl+yeAear+rdP+yG+vg+i+ lqq l+++ Cagra.2475s0001.1.p 5 PCAACKLLRRKCTQECVFAPYFPPTNPQKFICVHKVFGASNVTKILNDLPPDQREETVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKV 94 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++l+++kee Cagra.2475s0001.1.p 95 QQDLVTAKEE 104 *****99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 4.3E-111 | 2 | 307 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 27.201 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFICVHKV FGASNVTKIL NDLPPDQREE 60 TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKVQQDLVT AKEELVGYMG PDAVIPPPYL 120 PPLGNNPPPN FMMSMDGMPP GVIPHGEPLM IREPNLSQQH QPQDDQLQYI ASDAQRMAAM 180 IMDRGDQQGI FSGYGIDNNG SVTATGYNQM DVNHDHGAGG SLSGPSLALG NFADPYQMGQ 240 ETEHGHINHD QLQTQLMLQP PLQEGQEQTE EAQFLMQPMG QENLHEEEGE EELEPPVKWR 300 KSESKEASY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-46 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-46 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.2475s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB473835 | 0.0 | AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds. | |||
GenBank | AC003040 | 0.0 | AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence. | |||
GenBank | AC004482 | 0.0 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296515.1 | 0.0 | LOB domain-containing protein 10 | ||||
Swissprot | O64836 | 0.0 | LBD10_ARATH; LOB domain-containing protein 10 | ||||
TrEMBL | R0HZB7 | 0.0 | R0HZB7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2475s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14908 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23660.2 | 1e-156 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.2475s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|