PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.24523s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARF | ||||||||
Protein Properties | Length: 210aa MW: 23214.2 Da PI: 9.7467 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.2e-13 | 27 | 71 | 53 | 99 |
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 r +++r++lt+GW++Fv+ ++L +gD+vvF+ ++s e++++v+r+ Cagra.24523s0002.1.p 27 RTTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RKSADEMFIGVRRA 71 667889*************************..44788899***997 PP | |||||||
2 | Auxin_resp | 90.4 | 3.1e-30 | 126 | 208 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ +FevvY+P a++s+Fvvk+e+ve+++ + +++G+R+kma+etedss++++ +G+v ++ + ++ W++S+W++L+ Cagra.24523s0002.1.p 126 AINRAAQGLPFEVVYYPTAGWSDFVVKAEDVEASMAIFWTPGTRVKMAMETEDSSRITWfQGIVFSTYQ-ETGPWRGSPWKQLQ 208 67899******************************************************9******999.888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.024 | 1 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.25E-7 | 25 | 66 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-10 | 26 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.9E-10 | 27 | 71 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-12 | 27 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 5.1E-25 | 126 | 208 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MQRPHLWLIA SATSLHCCWH KGSSSSRTTP RRHLLTTGWS KFVNNKKLIA GDSVVFMRKS 60 ADEMFIGVRR APISSNVGGT SFYGGDEYCS YYQSSGGVAK EDDGSAKKGF RRTGKGKLTA 120 EAVSEAINRA AQGLPFEVVY YPTAGWSDFV VKAEDVEASM AIFWTPGTRV KMAMETEDSS 180 RITWFQGIVF STYQETGPWR GSPWKQLQV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.24523s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007143 | 0.0 | AC007143.5 Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence. | |||
GenBank | AK230014 | 0.0 | AK230014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-53-A06. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | JF729200 | 0.0 | JF729200.1 Arabidopsis thaliana ecotype C24 mitochondrion, complete genome. | |||
GenBank | JF729201 | 0.0 | JF729201.1 Arabidopsis thaliana ecotype Col-0 mitochondrion, complete genome. | |||
GenBank | JF729202 | 0.0 | JF729202.1 Arabidopsis thaliana ecotype Landsberg erecta mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302016.2 | 1e-109 | auxin response factor 17 | ||||
Swissprot | P92530 | 1e-105 | M940_ARATH; Uncharacterized mitochondrial protein AtMg00940 | ||||
TrEMBL | A0A178U5R5 | 1e-125 | A0A178U5R5_ARATH; Auxin response factor | ||||
STRING | Cagra.24523s0002.1.p | 1e-155 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-100 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.24523s0002.1.p |
Publications ? help Back to Top | |||
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