PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2418s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 183aa    MW: 19930.2 Da    PI: 5.6335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2418s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-172271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Cagra.2418s0001.1.p 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                         69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-222180IPR016177DNA-binding domain
CDDcd000184.36E-322181No hitNo description
PROSITE profilePS5103223.632279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-322280IPR001471AP2/ERF domain
SMARTSM003802.1E-372285IPR001471AP2/ERF domain
PfamPF008475.3E-112271IPR001471AP2/ERF domain
PRINTSPR003678.0E-132334IPR001471AP2/ERF domain
PRINTSPR003678.0E-136181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGHSNSSNK PQNDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GREARLNFPE LASTLPRPAD SSSDSIRMAA HEATLCLGTQ PVDSAMQVDS  120
SSSSAVSPTM VRLSPREIQA INESTLGSPS MWMHSTDDCM GFATDVGMNV WDTYQSDSLW  180
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172379663ATERF1
3gcc_A5e-172379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2418s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301876.11e-133ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-107ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLR0HY231e-132R0HY23_9BRAS; Uncharacterized protein
STRINGCagra.2418s0001.1.p1e-133(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-99ERF family protein