PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2412s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YB | ||||||||
Protein Properties | Length: 221aa MW: 25299.7 Da PI: 6.2309 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179.2 | 3.6e-56 | 37 | 132 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl kyr Cagra.2412s0002.1.p 37 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYR 126 89**************************************************************************************** PP NF-YB 92 elegek 97 ++egek Cagra.2412s0002.1.p 127 DTEGEK 132 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.8E-55 | 30 | 170 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.59E-42 | 39 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-28 | 42 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.5E-18 | 70 | 88 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 73 | 89 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.5E-18 | 89 | 107 | No hit | No description |
PRINTS | PR00615 | 2.5E-18 | 108 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTEESPEEDH GSPEIAETNP GSPSSKTNNN NNNNNNKEQD RFLPIANVGR IMKKVLPGNG 60 KISKDAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD DIIWAITTLG FEDYVAPLKV 120 YLCKYRDTEG EKVNSPKQQQ QQQRQQQQQQ IQQQNHHNYN QFQEQDQNNN NMSCTSYISH 180 HHPSPFLPAD HQPFPNIAFS PKPLQKQFPQ QHDNIDSIHW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-44 | 37 | 127 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-44 | 37 | 127 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2412s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007063 | 0.0 | AC007063.6 Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete sequence. | |||
GenBank | BT025276 | 0.0 | BT025276.1 Arabidopsis thaliana At2g13570 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ446491 | 0.0 | DQ446491.1 Arabidopsis thaliana clone pENTR221-At2g13570 CCAAT-box binding transcription factor (At2g13570) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296803.1 | 1e-137 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 1e-133 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | R0G2Z8 | 1e-136 | R0G2Z8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2412s0002.1.p | 1e-163 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 1e-119 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2412s0002.1.p |
Publications ? help Back to Top | |||
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